-
Notifications
You must be signed in to change notification settings - Fork 11
/
index.Rmd
250 lines (211 loc) · 9.42 KB
/
index.Rmd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
# Welcome {#welcome}
```{r getbib}
#| include: false
#| eval: false
# RefManageR is no longer sufficiently reliable, so bibliography is manually
# downloaded for the moment
if (!file.exists("statsoft.bib")) {
refs <- RefManageR::ReadZotero(
group = "2416765",
.params = list(limit = 100)
)
RefManageR::WriteBib(refs, "statsoft.bib")
}
```
```{r updates}
#| echo: false
# https://github.com/rstudio/bookdown/issues/440
# https://bookdown.org/yihui/bookdown/html-widgets.html
#install.packages("webshot")
#webshot::install_phantomjs()
# install.packages("tinytex")
# tinytex::tlmgr_update()
```
Welcome to [rOpenSci](https://ropensci.org)'s system for peer-review of
statistical software in R packages and beyond. This system extends our existing
system for [software peer
review](https://ropensci.org/software-review/), through [expanding the
scope](https://ropensci.org/blog/2019/07/15/expanding-software-review/) to
include explicitly statistical software. As such, it is a direct extension of
[rOpenSci Packages: Development, Maintenance, and
Peer Review](https://devguide.ropensci.org/). This book provides guidelines for
authors on how to develop statistical software, and for editors and reviewers
on our processes for peer review of statistical software.
You are invited to contribute to this project by participating in our [GitHub
Discussions](https://github.com/ropensci/statistical-software-review-book/discussions),
or filing suggestions as [issues in the book's GitHub
repository](https://github.com/ropensci/statistical-software-review-book/issues).
Feedback on standards is particularly welcome, for which
[the Discussions](https://github.com/ropensci/statistical-software-review-book/discussions)
have dedicated pages for each category of standards.
Submissions of statistical software for our peer-review system are currently
handled by the following team of expert editors:
- [Adam Sparks](https://adamhsparks.netlify.app/), Department of Primary Industries and Regional Development, Western Australia.
- [Emi Tanaka](https://emitanaka.org/), Biological Data Science Institute, Australian National University
- [Jouni Helske](https://jounihelske.netlify.app/), University of Jyväskylä, Finland.
- [Rebecca Killick](http://www.lancs.ac.uk/~killick/), Lancaster University, UK
- [Toby Hocking](http://tdhock.github.io/), Northern Arizona University, USA
This project has developed to its current state largely through the support of
a great advisory and editorial committee. We are grateful to all of the
following former members:
- [Ben Bolker](https://ms.mcmaster.ca/~bolker/)
([\@bolkerb](https://twitter.com/bolkerb)) McMaster University, Canada
- [Leonardo Collado-Torres](http://lcolladotor.github.io/)
([\@lcolladotor](https://twitter.com/lcolladotor)), Lieber Institute for
Brain Development, USA
- [Max Kuhn](http://appliedpredictivemodeling.com/)
([\@topepos](https://twitter.com/topepos)), RStudio
- [Martin Morgan](https://www.roswellpark.org/martin-morgan)
([\@mt_morgan](https://twitter.com/mt_morgan)), Roswell Park Comprehensive
Cancer Center
- [Stephanie Hicks](https://www.stephaniehicks.com/)
([\@stephaniehicks](https://twitter.com/stephaniehicks)), Johns Hopkins
University, USA
- [Paula Moraga](http://www.paulamoraga.com/), King Abdullah University of Science and Technology, Saudi Arabia
This work was largely [supported by the Sloan
Foundation](https://ropensci.org/blog/2019/07/15/expanding-software-review/)
and organized under an [R Consortium Working
Group](https://www.r-consortium.org/projects/isc-working-groups).
## Citation
You can cite this book by its [its Zenodo
DOI](https://doi.org/10.5281/zenodo.5556755), or by copying the following
BibTeX entry:
```{r zenodo}
#| echo: false
#| results: 'asis'
#| warning: false
cat("\n```bibtex\n")
u <- "https://zenodo.org/record/5556755" # universal URL redirects to latest
s <- rvest::session(u)
u <- paste0(s$url, "/export/hx") # redirected
out <- rvest::read_html(u)
bibentry <- rvest::html_element(out, "pre")
out <- strsplit (rvest::html_text(bibentry), "\n")[[1]]
writeLines(out, "dev_citation_BibTeX.bib")
cat (rvest::html_text (bibentry))
cat("\n```\n")
```
## Contributors
<!-- ALL-CONTRIBUTORS-LIST:START - Do not remove or modify this section -->
<!-- prettier-ignore-start -->
<!-- markdownlint-disable -->
All contributions to this project are gratefully acknowledged using the [`allcontributors` package](https://github.com/ropenscilabs/allcontributors) following the [all-contributors](https://allcontributors.org) specification. Contributions of any kind are welcome!
### Content
<table>
<tr>
<td align="center">
<a href="https://github.com/mpadge">
<img src="https://avatars.githubusercontent.com/u/6697851?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=mpadge">mpadge</a>
</td>
<td align="center">
<a href="https://github.com/maelle">
<img src="https://avatars.githubusercontent.com/u/8360597?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=maelle">maelle</a>
</td>
<td align="center">
<a href="https://github.com/noamross">
<img src="https://avatars.githubusercontent.com/u/571752?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=noamross">noamross</a>
</td>
<td align="center">
<a href="https://github.com/helske">
<img src="https://avatars.githubusercontent.com/u/1560448?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=helske">helske</a>
</td>
<td align="center">
<a href="https://github.com/Nowosad">
<img src="https://avatars.githubusercontent.com/u/3457131?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=Nowosad">Nowosad</a>
</td>
</tr>
<tr>
<td align="center">
<a href="https://github.com/richfitz">
<img src="https://avatars.githubusercontent.com/u/1558093?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=richfitz">richfitz</a>
</td>
<td align="center">
<a href="https://github.com/elong0527">
<img src="https://avatars.githubusercontent.com/u/465246?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=elong0527">elong0527</a>
</td>
<td align="center">
<a href="https://github.com/osorensen">
<img src="https://avatars.githubusercontent.com/u/21175639?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=osorensen">osorensen</a>
</td>
<td align="center">
<a href="https://github.com/christophsax">
<img src="https://avatars.githubusercontent.com/u/1390827?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=christophsax">christophsax</a>
</td>
<td align="center">
<a href="https://github.com/Pakillo">
<img src="https://avatars.githubusercontent.com/u/1597843?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=Pakillo">Pakillo</a>
</td>
</tr>
<tr>
<td align="center">
<a href="https://github.com/briatte">
<img src="https://avatars.githubusercontent.com/u/322533?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=briatte">briatte</a>
</td>
<td align="center">
<a href="https://github.com/grwhumphries">
<img src="https://avatars.githubusercontent.com/u/1613298?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=grwhumphries">grwhumphries</a>
</td>
<td align="center">
<a href="https://github.com/lcolladotor">
<img src="https://avatars.githubusercontent.com/u/2288213?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=lcolladotor">lcolladotor</a>
</td>
<td align="center">
<a href="https://github.com/rkillick">
<img src="https://avatars.githubusercontent.com/u/16543041?v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/commits?author=rkillick">rkillick</a>
</td>
</tr>
</table>
### Issue Authors
<table>
<tr>
<td align="center">
<a href="https://github.com/elimillera">
<img src="https://avatars.githubusercontent.com/u/24767886?u=16d22ed97b442cfa1847d0f110b7dbf5c190c5a5&v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/issues?q=is%3Aissue+author%3Aelimillera">elimillera</a>
</td>
<td align="center">
<a href="https://github.com/IndrajeetPatil">
<img src="https://avatars.githubusercontent.com/u/11330453?u=5383867dd88305e4ddae3cae9bb664be8d024a95&v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/issues?q=is%3Aissue+author%3AIndrajeetPatil">IndrajeetPatil</a>
</td>
<td align="center">
<a href="https://github.com/jsta">
<img src="https://avatars.githubusercontent.com/u/7844578?u=282b3dca72580763af0ac302219bef2936f981fc&v=4" width="100px;" alt=""/>
</a><br>
<a href="https://github.com/ropensci/statistical-software-review-book/issues?q=is%3Aissue+author%3Ajsta">jsta</a>
</td>
</tr>
</table>
<!-- markdownlint-enable -->
<!-- prettier-ignore-end -->
<!-- ALL-CONTRIBUTORS-LIST:END -->