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tagging version for github actions #172

tagging version for github actions

tagging version for github actions #172

Workflow file for this run

on: [push, pull_request]
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- { os: windows-latest, r: 'latest'}
- { os: macOS-latest, r: 'latest'}
- { os: macOS-latest, r: 'devel'}
- { os: ubuntu-16.04, r: 'latest', cran: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
CRAN: ${{ matrix.config.cran }}
VCR_VERBOSE_ERRORS: true
ENTREZ_KEY: ${{ secrets.ENTREZ_KEY }}
IUCN_REDLIST_KEY: ${{ secrets.IUCN_REDLIST_KEY }}
TROPICOS_KEY: ${{ secrets.ENTREZ_KEY }}
steps:
- uses: actions/checkout@v1
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
- uses: r-lib/actions/setup-pandoc@master
- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v1
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('DESCRIPTION') }}
- name: Install system dependencies
if: runner.os == 'Linux'
env:
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
run: |
Rscript -e "install.packages('remotes')" -e "remotes::install_github('r-hub/sysreqs')"
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
sudo -s eval "$sysreqs"
- name: Install dependencies
run: Rscript -e "install.packages('remotes')" -e "remotes::install_deps(dependencies = TRUE)" -e "remotes::install_cran('rcmdcheck')"
- name: Check
run: Rscript -e "rcmdcheck::rcmdcheck(args = '--no-manual', error_on = 'error', check_dir = 'check')"
- name: Upload check results
if: failure()
uses: actions/upload-artifact@master
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check
- name: Test coverage
if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'latest'
run: |
Rscript -e 'install.packages("covr")' -e 'covr::codecov(token = "${{secrets.CODECOV_TOKEN}}")'