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TODO: taxize, error checking and TBMap? #1

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sckott opened this issue May 31, 2011 · 0 comments
Closed

TODO: taxize, error checking and TBMap? #1

sckott opened this issue May 31, 2011 · 0 comments
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@sckott
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sckott commented May 31, 2011

  1. Carl got errors with:

    tree <- get_phylomatic_tree(phyformat, 'TRUE', 'POST', 'new', 'FALSE')
    ((annona_cherimola:0.333333,annona_muricata:45.333336)annona:12.666667)euphyllophyte:1.000000;
    Warning message:
    In read.tree(text = z) : empty character string.
    This is a problem with the 'POST' format Phylomatic query, possibly just use GET format queries.

  2. Possibly interface with Rod Page's taxonomy database 'TBMap', that already queries many taxonomic sources, including ITIS. No response from from Rod Page on email so far

@ghost ghost assigned sckott Jul 2, 2012
@sckott sckott closed this as completed Oct 17, 2012
sckott pushed a commit that referenced this issue Oct 7, 2017
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