Current trending name: Plastid Pipeline
The current (in development) documentation: PlastidPipeline Google Docs
snakemake --profile resources/simple/ --configfile config/config.yaml --resources chrome=1 --use-envmodules --use-conda --conda-prefix /scratch/sjannalda/projects/PlastidTutorial/envs --restart-times 3
To run the pipeline on the HPC: snakemake --profile resources/simple/ --configfile config/config.yaml --resources chrome=1 --use-envmodules --use-conda