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BuildClusterTree using reductions other than PCA #4598

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malosreet opened this issue Jun 9, 2021 · 1 comment
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BuildClusterTree using reductions other than PCA #4598

malosreet opened this issue Jun 9, 2021 · 1 comment
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enhancement New feature or request

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@malosreet
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In Seurat 4.0.1, the BuildClusterTree function builds the dendrogram based on PCA if the argument "dims" is provided. It would be useful to be able to specify the name of the reduction to use (for example a reduction returned by Harmony). It should be very easy to implement and I imagine it may be useful to other users as well.

Thanks!
@malosreet malosreet added the enhancement New feature or request label Jun 9, 2021
@timoast timoast closed this as completed Jun 11, 2021
@timoast timoast reopened this Jun 11, 2021
@timoast timoast self-assigned this Jun 11, 2021
timoast added a commit that referenced this issue Jun 14, 2021
@timoast
Add reduction parameter; #4598
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timoast commented Jun 14, 2021

We have now added a reduction parameter to BuildClusterTree(), which is currently available on the develop branch. See the website for installation instructions

@timoast timoast closed this as completed Jun 14, 2021
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