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Issues list

Python 3.12 support enhancement New feature or request
#643 opened Aug 20, 2024 by Zethson
2 of 3 tasks
@Lilly-May
2
Feature pertpy use-cases in our tutorial enhancement New feature or request
#642 opened Aug 19, 2024 by Zethson
@Lilly-May
Bootstrap not running bug Something isn't working
#641 opened Aug 14, 2024 by aterceros
@Lilly-May
7
possible to compute distances on a subset of genes? enhancement New feature or request
#640 opened Aug 14, 2024 by aterceros
@Zethson
Implement MiloDE (diff. expr. testing on top of milo framework) enhancement New feature or request
#635 opened Jul 30, 2024 by stefanpeidli
Update docs with new comparison metrics enhancement New feature or request
#630 opened Jun 24, 2024 by wxicu
FindConservedMarkers implementaion enhancement New feature or request
#629 opened Jun 22, 2024 by SNOL2
1
More/better guide assignment methods enhancement New feature or request
#628 opened Jun 12, 2024 by Zethson
Improve DE tutorial enhancement New feature or request
#615 opened May 27, 2024 by grst
@Zethson
1
Add linear mixed effects model to DE interface enhancement New feature or request
#614 opened May 27, 2024 by grst
Parallelize DE methods that support it enhancement New feature or request
#613 opened May 27, 2024 by grst
Add diagnostic output for model.cond enhancement New feature or request
#612 opened May 27, 2024 by grst
@grst
HTML widget for DE Model classes enhancement New feature or request
#611 opened May 27, 2024 by grst
Extend PyDESeq2 class to support arbitrary contrasts and designs enhancement New feature or request
#610 opened May 27, 2024 by grst
How to plot the 0 value during different comparisons? enhancement New feature or request
#598 opened May 20, 2024 by mainharryHR
@Lilly-May
11
Expression prediction tutorial enhancement New feature or request
#587 opened May 2, 2024 by Zethson
1 of 3 tasks
@Zethson @Hrovatin @eroell
1
annotate_compounds for combinations of drugs enhancement New feature or request
#582 opened Apr 9, 2024 by MUCDK
@wxicu
2
Add dataloader for sciplex-GxE enhancement New feature or request
#556 opened Mar 11, 2024 by Zethson
@namsaraeva
Add dataloader for Jiang et al enhancement New feature or request
#542 opened Feb 20, 2024 by Zethson
@namsaraeva
1
Get cleaner URLs for documentation enhancement New feature or request
#532 opened Feb 9, 2024 by Zethson
Bootstrap support for error estimation enhancement New feature or request
#497 opened Jan 11, 2024 by eroell 2024
@eroell
L1000 comparisons enhancement New feature or request
#495 opened Jan 9, 2024 by Zethson
Improve pytest speed enhancement New feature or request performance Performance
#430 opened Nov 9, 2023 by Zethson
1 of 5 tasks
@Lilly-May @wxicu
2
Streamlining Distance API enhancement New feature or request
#416 opened Oct 31, 2023 by Zethson
@yugeji @Zethson
@stefanpeidli @tessadgreen @mojtababahrami @Lilly-May
5
Improve GPU support for scgen enhancement New feature or request
#415 opened Oct 31, 2023 by Zethson
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