Add custom java truststore support and improved exception handling

[ejseqera]

• Adds better exception handling in try/catch for general unexpected runtime exceptions (i.e. NullPointerException, MissingPropertyException) and for HTTP response exceptions specific to calls made by REST client.

• Adds support for providing custom cacerts if used by Seqera Platform Enterprise instances to be used by REST client in functions.nf and to propagate to tw CLI call in SEQERA_RUN_DUMPS process

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the pipeline conventions in the contribution docs
• Make sure your code lints (nf-core lint).
• Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
• Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
• Usage Documentation in docs/usage.md is updated.
• Output Documentation in docs/output.md is updated.
• CHANGELOG.md is updated.
• README.md is updated (including new tool citations and authors/contributors).

[robsyme]

Very nice. Thanks Esha!

[FriederikeHanssen]

I tried running this on my QL2 test-runs by just switching out the revision. I guess the https://cloud.seqera.io/orgs/scidev/workspaces/testing/watch/3qH91IevSxwp0Z Is setting the param java_truststore_path mandatory?

[drpatelh]

Looks great @ejseqera ! I'll have a play locally to see if I can get the tests passing. Be good to confirm that this works in the real-world too.

[adamrtalbot]

I currently get this in the console but it doesn't fail:

WARN: 
        An error occurred while getting workflow details for workflow 3TQhCnJfQsmVGd in workspace etc/etc:
            ↳ startup failed:
Script_a693abc4d14fb12f673d1f777bff0af8.groovy: 191: Unexpected input: '{' @ line 191, column 9.
   process {
           ^

1 error

        
ERROR ~ Exception: startup failed:
Script_a693abc4d14fb12f673d1f777bff0af8.groovy: 191: Unexpected input: '{' @ line 191, column 9.
   process {
           ^

[drpatelh]

🚀