v1.9.6

What's Changed

• docs: add Liqing details by @adthrasher in #116
• fix: correct BAM header by @adthrasher in #117
• fix: sambamba is not installed by @adthrasher in #118

Full Changelog: v1.9.5...v1.9.6

v1.9.5

What's Changed

• Bug fix by @adthrasher in #112

Full Changelog: v1.9.4...v1.9.5

v1.9.4

What's Changed

• Fix find for issue #109. Bump Docker base image to 20.04 by @adthrasher in #111

Full Changelog: v1.9.3...v1.9.4

v1.9.3

What's Changed

• Parameterize max checks for gfServer availability. by @adthrasher in #106
• Add libssl dependency for BioPerl. Pin Test::Deep to resolve Perl dep… by @adthrasher in #107

Full Changelog: v1.9.2...v1.9.3

v1.9.2

What's Changed

• Update DX app to Ubuntu 20.04 by @adthrasher in #103

Full Changelog: v1.9.1...v1.9.2

v1.9.1

What's Changed

• Update CGC action to point to cgc-go repo in stjudecloud by @adthrasher in #100
• Fix sorting of blat results by @liqingti in #101
• Update cgc metadata tags by @adthrasher in #102

Full Changelog: v1.9.0...v1.9.1

v.1.9.0

What's Changed

• Update cgc by @adthrasher in #82
• refgene2protein updates by @mnedmonson in #86
• refgene2protein: add transcript_variant_numeric field. by @mnedmonson in #88
• Gr ch37 trunk by @B2Pi in #89
• Update RNApeg image invocation by @adthrasher in #97
• Update Docker invocation for CICERO by @adthrasher in #98
• added absolute path to final_qa steps for Slurm cluster by @drkennetz in #94

New Contributors

• @drkennetz made their first contribution in #94

Full Changelog: v1.8.1...v1.9.0

v1.8.1

Add license and categories to CWL implementation

v1.8.0

Updates to the CGC CWL implementation of CICERO to prepare for public release

v1.7.1

Fix issue with command line argument length when a large number of unfiltered fusion files are generated.

Thanks to @mjz1 for reporting the issue and suggesting a fix.