This version works fine with the latest version of blast+ (v2.12.0)
git clone https://github.com/stromviklab/ProtExcluder.git
cd ProtExcluder
perl Installer.pl -m full path to Hmmer -p ProtExcluder full path
*path must end with /
perl ProtExcluder.pl -f <INT> blastx_output fasta_file
This is a modified version of ProtExcluder downloaded from its original site at http://www.hrt.msu.edu/uploads/535/78637/ProtExcluder1.2.tar.gz
Two of the scripts, namely ProtExcluder.npl and mspesl-sfetch.npl are
modified so that the paths for HMMER and this package do not need to be changed
after conda install.
For any potential questions regarding running the software, please refer to the original webpage at http://weatherby.genetics.utah.edu/MAKER/wiki/index.php/Repeat_Library_Construction-Advanced
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Nanjiang Shu (NBIS) [email protected]