4.2.0

Features:

• Samtools idxstats included

Fixes:

• Deeptools alignment sieve producing non position-sorted bams

4.1.3

Features:

• Reduce fastp threads

4.1.2

Features:

• Fastp threads reduced

4.1.1

Features:

• Allow local snakemake wrappers
• Allow local modules

4.1.0

Features:

• Fastp output compressed

4.0.0

Features:

• Deeptools alignment sieve (on params/make_sieve set to true)
• snakemake_wrappers up to 3.13.7

3.5.2

Features:

• fair_genome_indexer up to 3.8.1
• Memory / Time reservations

3.5.1

Features:

• fair_genome_indexer up to 3.8.0
• fair_fastqc_multiqc up to 2.3.5

3.5.0

Features:

• fair_genome_indexer up to 3.7.0
• fair_fastqc_multiqc up to 2.3.4

3.4.0

Features:

• Fix benchmark IO for rseqc bamstat
• Use of wrappers for ngsderive
• tmp/logs/benchmark hold rulenames
• fair_fastqc_multiqc and fair_genome_indexer updates
• Pipeline can now localy import sub-modules