Releases: tdayris/fair_rnaseq_salmon_quant
Releases · tdayris/fair_rnaseq_salmon_quant
1.2.3
Features:
- Snakemake wrappers up to 3.13.7
- fair_genome_indexer up to 3.8.1
- Allow local modules and wrappers
1.2.2
Features:
- Snakemake wrappers up to 3.13.6
- fair_genome_indexer up to 3.8.0
- fair_fastqc_multiqc up to 2.3.5
1.2.1
Features:
- Snakemake wrappers up to 3.10.1
- fair_genome_indexer up to 3.4.4
- fair_fastqc_multiqc up to 2.2.7
- log, benchmark, and temp files renamed to follow rule names
1.1.0
Features:
- all configuration keys are now optional
- fair_fastqc_multiqc_pipeline update to 2.2.3
- fair_genome_indexer update to 3.4.0
- snakemake-wrappers update to 3.7.0
- MultiQC configuration file
Fixes:
1.0.2
Features:
- Use
lookup
and branch
instead of hand made functions
- Pipeline can be used through mamba + apptainer
- fair_fastqc_multiqc_pipeline version 2.0.4
- fair_genome_indexer version 3.1.4
- snakemake wrappers v3.3.6
1.0.0
Features
- Control/Clean fastq files
- Estimate quantification
- Build report (snakemake + datavzrd)
- Build a single table with all counts from all samples
- Snakemake-wrappers v3.3.3
- Snakemake v8+ compatible
- fair_genome_indexer v3.0.0