1.2.3

Features:

• Snakemake wrappers up to 3.13.7
• fair_genome_indexer up to 3.8.1
• Allow local modules and wrappers

1.2.2

Features:

• Snakemake wrappers up to 3.13.6
• fair_genome_indexer up to 3.8.0
• fair_fastqc_multiqc up to 2.3.5

1.2.1

Features:

• Snakemake wrappers up to 3.10.1
• fair_genome_indexer up to 3.4.4
• fair_fastqc_multiqc up to 2.2.7
• log, benchmark, and temp files renamed to follow rule names

1.1.0

Features:

• all configuration keys are now optional
• fair_fastqc_multiqc_pipeline update to 2.2.3
• fair_genome_indexer update to 3.4.0
• snakemake-wrappers update to 3.7.0
• MultiQC configuration file

Fixes:

• Documentation errors

1.0.2

Features:

• Use lookup and branch instead of hand made functions
• Pipeline can be used through mamba + apptainer
• fair_fastqc_multiqc_pipeline version 2.0.4
• fair_genome_indexer version 3.1.4
• snakemake wrappers v3.3.6

1.0.0

Features

• Control/Clean fastq files
• Estimate quantification
• Build report (snakemake + datavzrd)
• Build a single table with all counts from all samples
• Snakemake-wrappers v3.3.3
• Snakemake v8+ compatible
• fair_genome_indexer v3.0.0