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@bryce-turner bryce-turner released this 07 Sep 01:56
· 4 commits to master since this release

This release adds new features and fix some minor bugs

The addition of the new features required to modify and update the germline pre-processing scripts to implement dragen VCFs pre-processings

New Features

  • processing VCF from two new tools: dragen_snv and dragen_sv ; These tools are part of the Illumina Dragen Pipeline ;
  • remove duplicated lines from dragen_sv tool using an external tool implemented in python3 (main_dedup_sv.py ; needs to be in the PATH)

Bugs fixed

  • fix keyError bug: replace data[0] with data[tool]
  • replace cp with rsync
  • check the step value that update the counter is correctly assigned when the total count of variant from the union of all the VCF is less than 10 variants
  • Fix indels filtering out with Phaser; Encountered edge cases; fix issue #27.