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name: CI Roberto | ||
on: | ||
push: | ||
tags: | ||
- '[1-9]+.[0-9]+.[0-9]+*' | ||
branches: | ||
- master | ||
pull_request: | ||
branches: | ||
- master | ||
|
||
jobs: | ||
# These are quick tests using Python's venv on different Python versions. | ||
test-venv: | ||
timeout-minutes: 30 | ||
if: "! startsWith(github.ref, 'refs/tags')" | ||
strategy: | ||
fail-fast: false | ||
matrix: | ||
include: | ||
- os: ubuntu-latest | ||
python-version: 3.7 | ||
- os: ubuntu-latest | ||
python-version: 3.8 | ||
- os: ubuntu-latest | ||
python-version: 3.9 | ||
- os: macos-latest | ||
python-version: 3.7 | ||
- os: macos-latest | ||
python-version: 3.8 | ||
- os: macos-latest | ||
python-version: 3.9 | ||
|
||
runs-on: ${{ matrix.os }} | ||
env: | ||
# Tell Roberto to upload coverage results | ||
ROBERTO_UPLOAD_COVERAGE: 1 | ||
steps: | ||
- uses: actions/checkout@v3 | ||
with: | ||
fetch-depth: 2 | ||
- name: Fetch base branch (usually master) | ||
run: | | ||
if [[ -n "${GITHUB_HEAD_REF}" ]]; then | ||
git fetch origin ${GITHUB_BASE_REF} --depth=2 | ||
fi | ||
- name: Set up Python ${{ matrix.python-version }} | ||
uses: actions/setup-python@v4 | ||
with: | ||
python-version: ${{ matrix.python-version }} | ||
architecture: x64 | ||
- uses: actions/cache@v2 | ||
with: | ||
path: ~/.local/venvs | ||
key: ${{ runner.os }}-Python-${{ matrix.python-version }}-venv | ||
- name: Install Pip and Roberto | ||
run: | | ||
python -m pip install --upgrade pip | ||
python -m pip install roberto>=2.0.0 | ||
- name: Test with Roberto | ||
run: | | ||
if [[ -n "${GITHUB_HEAD_REF}" ]]; then | ||
ROBERTO_GIT_MERGE_BRANCH=${GITHUB_SHA} \ | ||
ROBERTO_GIT_BRANCH=${GITHUB_BASE_REF} \ | ||
python -m roberto | ||
else | ||
ROBERTO_TESTENV_USE=venv \ | ||
python -m roberto robot | ||
fi | ||
test-conda: | ||
# This is a slow test in a Conda environment, including deployment of | ||
# tagged releases. | ||
timeout-minutes: 30 | ||
if: (github.ref == 'refs/heads/master') || startsWith(github.ref, 'refs/tags') | ||
strategy: | ||
fail-fast: false | ||
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runs-on: ubuntu-latest | ||
env: | ||
ROBERTO_UPLOAD_COVERAGE: 1 | ||
ROBERTO_PACKAGE_MANAGER: conda | ||
ROBERTO_TESTENV_USE: conda | ||
ROBERTO_DEPLOY_NOARCH: 1 | ||
TWINE_USERNAME: theochem | ||
TWINE_PASSWORD: ${{ secrets.TWINE_PASSWORD }} | ||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
ANACONDA_API_TOKEN: ${{ secrets.ANACONDA_API_TOKEN }} | ||
steps: | ||
- uses: actions/checkout@v3 | ||
- uses: actions/cache@v2 | ||
with: | ||
path: | | ||
~/miniconda3 | ||
!~/miniconda3/conda-bld | ||
!~/miniconda3/locks | ||
!~/miniconda3/pkgs | ||
!~/miniconda3/var | ||
!~/miniconda3/envs/*/conda-bld | ||
!~/miniconda3/envs/*/locks | ||
!~/miniconda3/envs/*/pkgs | ||
!~/miniconda3/envs/*/var | ||
key: ${{ runner.os }}-conda-3 | ||
- name: Install Roberto | ||
run: | | ||
python -m pip install roberto>=2.0.0 | ||
- name: Test and deploy with Roberto | ||
run: | | ||
python -m roberto robot |
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name: CI Tox | ||
on: | ||
workflow_dispatch: # Needed to manually run github actions | ||
push: | ||
pull_request: | ||
branches: [ master ] | ||
|
||
jobs: | ||
test: | ||
name: test ${{ matrix.py }} - ${{ matrix.os }} | ||
runs-on: ${{ matrix.os }}-latest | ||
strategy: | ||
fail-fast: false # If anything in the matrix fails, then everything queued and in-progress will canceled | ||
matrix: | ||
# Which environment and python versions to be runned on. | ||
os: [ubuntu macos windows] | ||
py: ["3.7", "3.8", "3.9", "3.10", "3.11"] | ||
|
||
steps: | ||
- uses: actions/checkout@v3 | ||
- name: Setup python for test ${{ matrix.py }} | ||
uses: actions/setup-python@v4 | ||
with: | ||
python-version: ${{ matrix.py }} | ||
- name: Install tox-gh | ||
run: | | ||
python -m pip install --upgrade pip | ||
pip install tox tox-gh-actions | ||
- name: Setup test suite | ||
run: tox r -vv --notest # r means run environments, -vv verbose --notest skip invoking test commands. | ||
- name: Run test suite | ||
# --skip-pkg-install skips installing the package | ||
run: tox r --skip-pkg-install | ||
env: | ||
PYTEST_ADDOPTS: "-vv --durations=10" |
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absolute: true # Force absolute comparison for cardboardlint | ||
project: | ||
name: grid | ||
# requirements: [[numpydoc, numpydoc], [sphinx-autoapi, sphinx-autoapi], [sphinxcontrib-bibtex, sphinxcontrib-bibtex]] | ||
packages: | ||
- dist_name: qc-grid | ||
tools: | ||
- write-py-version | ||
# - cardboardlint-static | ||
- build-py-inplace | ||
- pytest | ||
# - upload-codecov | ||
# - cardboardlint-dynamic | ||
# - build-sphinx-doc | ||
# - upload-docs-gh | ||
- build-py-source | ||
- build-conda | ||
- deploy-pypi | ||
- deploy-conda | ||
# - deploy-github |
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# GRID | ||
[![Build Status](https://travis-ci.org/theochem/grid.svg?branch=master)](https://travis-ci.org/theochem/grid) | ||
[![Build Status](https://dev.azure.com/yxt1991/Grid/_apis/build/status/theochem.grid?branchName=master)](https://dev.azure.com/yxt1991/Grid/_build/latest?definitionId=2&branchName=master) | ||
[![codecov](https://codecov.io/gh/theochem/grid/branch/master/graph/badge.svg)](https://codecov.io/gh/theochem/grid)<br/> | ||
# Grid | ||
|
||
[![Python Version](https://img.shields.io/badge/python-3.6%2B-blue.svg)](https://docs.python.org/3/whatsnew/3.6.html) | ||
[![GPLv3 license](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://github.com/theochem/grid/blob/master/LICENSE) | ||
[![GPLv3 License](https://img.shields.io/badge/License-GPL%20v3-yellow.svg)](https://opensource.org/licenses/) | ||
[![GitHub Actions CI Tox Status](https://github.com/theochem/grid/actions/workflows/ci_tox.yml/badge.svg?branch=master)](https://github.com/theochem/grid/actions/workflows/ci_tox.yml) | ||
[![codecov](https://codecov.io/gh/theochem/grid/branch/master/graph/badge.svg)](https://codecov.io/gh/theochem/grid) | ||
[![GitHub contributors](https://img.shields.io/github/contributors/theochem/grid.svg)](https://github.com/theochem/grid/graphs/contributors) | ||
[![Code Style](https://img.shields.io/badge/code%20style-black-black.svg)](https://black.readthedocs.io/en/stable/) | ||
|
||
## About | ||
GRID is a pythonic numerical integral package. It derived from legacy HORTON 2 numerical integration module. | ||
Grid is a simple, free, and open-source Python library for numerical integration, interpolation and differentiation. | ||
Primarly intended for the quantum chemistry community to assist in density-functional (DFT) theory calculations, | ||
including support for periodic boundary conditions. | ||
|
||
Please visit [**Grid Documentation**](https://grid.qcdevs.org/) for more information with | ||
examples about the software. | ||
|
||
## Platform | ||
GRID is a pure python package supporting `Windows`, `Linux` and `MacOS`. | ||
To report any issues or ask questions, either [open an issue]( | ||
https://github.com/theochem/grid/issues/new) or email [[email protected]](). | ||
|
||
## Functionality | ||
* 1d integral | ||
* 1d transformation | ||
* Spherical integral | ||
* Becke-Lebedev grid & Molecular integral | ||
* Interpolation & differentiation | ||
* General ODE solver and Poisson solver | ||
|
||
## License | ||
GRID is distributed under [GPL License version 3](https://github.com/theochem/grid/blob/master/LICENSE) (GPL v3). | ||
## Citation | ||
Please use the following citation in any publication using BFit library: | ||
|
||
## Dependence | ||
* Installation requirements: `numpy`, `scipy`, `importlib_resources` | ||
* Testing requirement: `pytest` | ||
* QA requirement: `tox` | ||
> **"Grid: A Python Library for Molecular Integration, Interpolation, and More"**, | ||
> X.D. Yang, A. Tehrani, L. Pujal, R. Hernández-Esparza, | ||
> M. Chan, E. Vöhringer-Martinez, T. Verstraelen, F. Heidar-Zadeh, P. W. Ayers | ||
> `REFERENCE <https://doi.org/TODO>`__. | ||
## Installation | ||
To install GRID to system: | ||
```bash | ||
pip install . | ||
``` | ||
To run tests: | ||
```bash | ||
pytest --pyargs grid | ||
``` | ||
|
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## Local build and Testing | ||
To install editable GRID locally: | ||
```bash | ||
pip install -e . | ||
``` | ||
To run tests: | ||
Installation via pip can be done by the following command: | ||
```bash | ||
pytest tests | ||
pip install qc-grid | ||
``` | ||
|
||
## Quality Assurance | ||
To run QA locally: | ||
Local installation can be done as: | ||
```bash | ||
tox | ||
git clone https://github.com/theochem/grid.git | ||
cd grid | ||
pip install . | ||
``` | ||
|
||
## Funding Acknowledgement | ||
This software was developed using funding from a variety of international | ||
sources including, but not limited to: | ||
* Canarie | ||
* the Canada Research Chairs | ||
* Compute Canada | ||
* the European Union's Horizon 2020 Marie Sklodowska-Curie Actions (Individual Fellowship No 800130) | ||
* the Foundation of Scientific Research--Flanders (FWO) | ||
* McMaster University | ||
* the National Fund for Scientific and Technological Development of Chile (FONDECYT) | ||
* the Natural Sciences and Engineering Research Council of Canada (NSERC) | ||
* the Research Board of Ghent University (BOF) | ||
* Sharcnet |
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