NER and Relation Extraction from Electronic Health Records (EHR).
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Updated
Mar 16, 2022 - Python
NER and Relation Extraction from Electronic Health Records (EHR).
Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)
MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
Ready to use BioBert pytorch weights for HuggingFace pytorch BertModel 😌
This repository contains data and BioBert based NER model monologg/biobert_v1.1_pubmed from community-uploaded Hugging Face models for detecting entities such as chemical and disease.
Training and computational/visualization analysis of BERT and BioBERT using PyTorch and huggingface.
A cost-sensitive BERT that handles the class imbalance for the task of biomedical NER.
A simple binary prediction model that gets the Alzheimer's drugs' description texts as input. It classifies the drugs into two Small Molecules (SM) and Disease modifying therapies (DMT) categories. The model utilizes BERT for word embeddings.
BioBert for Q&A
Efficient Delay Reason Extraction in Patient Appointments/Treatments Using BERT and Tensorflow. - Feb 2022 - Jun 2023
This project is a demo for Bert Question Answering on medical data.
The model identifies chemical components and genes named entities and extracts the relations of the chemical-gene pair jointly. It utilizes the BioBERT model in the named entity recognition and the graphs neural networks for the RE subtasks.
summer internship project @ JetBrains Research
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