The second part of https://github.com/npanuhin/BIOCAD
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Updated
Mar 12, 2021 - Python
The second part of https://github.com/npanuhin/BIOCAD
Multi-class classification of drug resistance in MTB clinical isolates
Small GATK alignment and variant calling pipeline using python
This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.
Fast bwa-mem dna matching algor implemented in system verilog, fully synthesizable.
Multi-class classification of drug resistance in MTB clinical isolates
Collecting Genotypes from ENA and make their SNPs
Created a pipeline to carry out the alignment of a reference genome to the creation of a variant calling format (VCF).
Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.
Library-free horizontal transfer detection, with a focus on transposable element invasions
Nextflow resequencing pipeline with bwa-mem and freebayes
R wrapper for BWA-backtrack and BWA-MEM aligners
vSNP -- validate SNPs
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
The DKFZ alignment workflow plugin originally developed at the eilslabs
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