The second part of https://github.com/npanuhin/BIOCAD
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Updated
Mar 12, 2021 - Python
The second part of https://github.com/npanuhin/BIOCAD
Multi-class classification of drug resistance in MTB clinical isolates
Multi-class classification of drug resistance in MTB clinical isolates
R wrapper for BWA-backtrack and BWA-MEM aligners
Created a pipeline to carry out the alignment of a reference genome to the creation of a variant calling format (VCF).
Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.
Nextflow resequencing pipeline with bwa-mem and freebayes
This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.
Fast bwa-mem dna matching algor implemented in system verilog, fully synthesizable.
Small GATK alignment and variant calling pipeline using python
vSNP -- validate SNPs
Collecting Genotypes from ENA and make their SNPs
The DKFZ alignment workflow plugin originally developed at the eilslabs
Library-free horizontal transfer detection, with a focus on transposable element invasions
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