Collection of LabView & Matlab tools for simultaneous calcium & fMRI measurements
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Updated
Jul 24, 2018 - MATLAB
Collection of LabView & Matlab tools for simultaneous calcium & fMRI measurements
Automated Cell Segmentation by Adaptive Thresholding (ACSAT)
interactive analysis of two-photon calcium imaging data
Scripts to create prominence plots from widefield calcium imaging data. Steinmetz et al., 2017 eneuro
Scripts for extraction and analysis of widefield calcium data from awake behaving mice.
Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)
Matlab scripts for analyzing calcium imaging data presented in "Neural Coding of Leg Proprioception in Drosophila" (Mamiya, Gurung, and Tuthill (2018) Neuron: DOI:https://doi.org/10.1016/j.neuron.2018.09.009)
Basic toolbox for analysis of in vivo 2-photon data. Originally written at Glenn Turner's lab, CSHL, when I was working with flies.
2-Photon Imaging Data Registration/Alignment Across Recording Days. Created for Apostolides Lab, rotation 2, Fall 2020.
Complete Matlab pipeline for matching in vivo recorded cells post hoc in histology
Repository for the article "Distributed chromatic processing at the interface between retina and brain in the larval zebrafish", Guggiana et al. 2021, Curr. Bio.
Toolbox for fast, variational 1D alignment
3D files for an active commutator, endoscope encasing, etc
Calcium signal processing algorithm for automated analysis of intracellular calcium responses
An open-source automated surgical instrument for microendoscope implantation
This repository is a streamlined Miniscope Analysis pipeline that utilizes open source projects to motion correct, extract curate and align Miniscope data.
Code to analyze calcium imaging data in Algamal et al. 2022, doi: https://doi.org/10.1101/2022.04.27.489759
Matlab routines for online non-rigid motion correction of calcium imaging data
CalciumImaging analysis matlab pipeline for suite2p outputs
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