A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
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Updated
Nov 24, 2023 - Python
A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720
A vocabulary for describing Zebrafish Phenotypes
Software for performing offline tracking of zebrafish larvae.
#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology
Code for "Convergent Temperature Representations in Artificial and Biological Neural Networks"
Zebrafish embryo fluorescence quantification
A simple tool for zebrafish brain visualization.
Behavioral and Transcriptomic Analyses of mecp2 Function in Zebrafish
🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)
Set of functions, scripts and notebooks used in the brain-wide auditory processing project
1-week project for Champalimaud Research
Computing functional maps in zebrafish brain
Early life GC exposed time-series mRNA-seq analysis and DNA methylome
This is a collection of Knime workflows developed for the analysis of the data obtained with the FishInspector software
Behaviour analysis tracking and data analysis software using machine vision to track larval zebrafish behaviour. Software is built using C++,QT and OpenCV, while R scripts are used for data analysis and figure generation.
This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.
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