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Jan 13, 2022 - C
cell-free-dna
Here are 15 public repositories matching this topic...
A code to simulate the events of cell-free protein expression
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Aug 13, 2023 - R
Structural Variants in cell-free tumor DNA
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May 21, 2018
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
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Nov 8, 2022 - Python
Hunting for CMV and HHV-6 in cfDNA sequence
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Jan 28, 2020 - R
An awesome set of epigenetic pipelines for bulk cfChip-seq, ChIP-seq, and ATAC-seq
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Sep 12, 2024 - Python
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
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Jun 6, 2024 - Python
cell-free ChIP-seq pipeline
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Feb 7, 2024 - Python
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
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Aug 12, 2024 - R
Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.
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Jun 5, 2019 - Python
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
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Aug 27, 2024 - Python
R package to work with ctDNA sequencing data
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Feb 20, 2022 - R
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
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Aug 18, 2022 - Python
Copy number calling and variant classification using targeted short read sequencing
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Sep 13, 2024 - R
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
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Mar 20, 2024 - R
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