cfdna
Here are 21 public repositories matching this topic...
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data
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Aug 18, 2022 - Python
R package to work with ctDNA sequencing data
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Feb 20, 2022 - R
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
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Mar 27, 2020 - R
Important papers relating to the biology of cell free DNA
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Sep 21, 2018
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
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Aug 27, 2024 - Python
R package and vignette to denoise metagenomic cell-free DNA sequencing data.
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Nov 5, 2019 - Roff
cfDNA methylation probe design from mybaits targeted sequencing
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Jul 13, 2018 - Python
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
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Jun 6, 2024 - Python
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
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Nov 8, 2022 - Python
Cancer estimation based on nucleosomes: Analysis of proportion of circulating tumor DNA fragments compared to nucleosome references.
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Dec 2, 2019 - C
Plasma cell-free DNA hydroxymethylomes discriminate disease state in EGFR-mutant non-small cell lung cancer.
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Mar 17, 2023 - R
Code for SCLC cfMeDIP-seq PRIME as described in the following paper: doi: 10.1016/j.isci.2022.105487
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Aug 28, 2023 - R
Structural Variants in cell-free tumor DNA
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May 21, 2018
This repository contains the code used in the following publication: doi.org/10.1016/j.isci.2022.105487
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Jun 27, 2023 - R
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