Cancer estimation based on nucleosomes: Analysis of proportion of circulating tumor DNA fragments compared to nucleosome references.
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Updated
Dec 2, 2019 - C
Cancer estimation based on nucleosomes: Analysis of proportion of circulating tumor DNA fragments compared to nucleosome references.
Plasma cell-free DNA hydroxymethylomes discriminate disease state in EGFR-mutant non-small cell lung cancer.
Structural Variants in cell-free tumor DNA
Code for SCLC cfMeDIP-seq PRIME as described in the following paper: doi: 10.1016/j.isci.2022.105487
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
This repository contains the code used in the following publication: doi.org/10.1016/j.isci.2022.105487
cfDNA methylation probe design from mybaits targeted sequencing
As a tool for cancer subtype prediction, Keraon uses features derived from cell-free DNA (cfDNA) in conjunction with PDX reference models to perform both classification and heterogenous phenotype fraction estimation.
Important papers relating to the biology of cell free DNA
R package and vignette to denoise metagenomic cell-free DNA sequencing data.
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants
R package to work with ctDNA sequencing data
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