Python package to study microbial communities using metabolic modeling.
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Updated
Aug 6, 2024 - Python
Python package to study microbial communities using metabolic modeling.
StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy
diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
ECMproject is a standalone python program, which enumerates Elementary Conversion Modes (ECMs) of metabolic models.
Multi-scale model of Metabolism In Cellular Systems
Bioinformatics project analyzing cancer metabolism using computational modeling and analysis. The project was awarded the GIDI-UP: Summer Research Award and includes data, models, and scripts.
Multivariate thermodynamics-based metabolic flux analysis in Python.
Adjusting for false discoveries in constraint- and sampling-based differential metabolic flux analysis
Constraint-based model vulnerabilities analysis - Python analysis tool http://contrabass.unizar.es
Reaction Inclusion by Parsimony and Transcript Distribution
Python package and workflow for EFM calculation via (mp)lrs and efmtool
A class based on COBRApy to handle quantitative mutations on metabolic models.
Constraint-based modeling of metabolism using Mixed Integer Optimization
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
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