Discussions

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  Warning in the Community building and other modelling function

  Mushahid2521 started Jul 10, 2024 in General

  

  

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  AGORA2 issues with .mat files

  katjadellalibera started Jun 24, 2024 in General

  

  

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  Minimal media for multiple samples vs single sample

  zoey-rw asked May 6, 2024 in Q&A · Unanswered

  

  

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  phenotype data frame format for association plot

  alejandrocs98 started Apr 19, 2024 in General

  

  

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  Visualisations

  ChristianLieven started Jun 22, 2021 in Show and tell

  

  

  

  

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  Thoughts on the recently published paper testing several GEM tools, including MICOM?

  PathogeNish asked Feb 14, 2024 in Q&A · Answered

  

  

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  Members of microbial community have different values for flux of exchanged metabolite.

  sankarmaheshr asked Jan 26, 2024 in Q&A · Answered

  

  

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  unexpected outcome of cooperative_tradeoff with two-strain community of default E.coli models

  justuswfink asked Jan 29, 2024 in Q&A · Unanswered

  

  

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  Comparing growth of an organism in monoculture vs. coculture

  justuswfink asked Nov 22, 2023 in Q&A · Answered

  

  

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  Performing FVA in MICOM

  sankarmaheshr asked Jan 28, 2024 in Q&A · Answered

  

  

  

  

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  Negative values in Community.knockout_taxa() using “relative change” method

  alejandrocs98 asked Jan 25, 2024 in Q&A · Answered

  

  

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  How to determine crossfeeding between two species?

  hannahschrenk asked Dec 12, 2023 in Q&A · Answered

  

  

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  Using MICOM to model microbiome response to food challenge

  PathogeNish started Dec 12, 2023 in General

  

  

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  Model incapable of using metabolite generated by other model

  rcolpo asked Dec 4, 2023 in Q&A · Answered

  

  

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  Flux Variablity or Engineering

  zorzansi asked Oct 6, 2023 in Q&A · Unanswered

  

  

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  Adding sbml file to pickled community

  Montazar1234 asked Oct 10, 2023 in Q&A · Unanswered

  

  

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  Could not solve cooperative tradeoff for sample X. Provided upper bound smaller than lower bound

  GeraldineKong asked Oct 24, 2023 in Q&A · Answered

  

  

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  Question about units

  vgenisel asked Jul 26, 2023 in Q&A · Unanswered

  

  

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  How to obtain the metabolite concentration of a community

  clauSilvaA asked Sep 11, 2023 in Q&A · Answered

  

  

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  Simulating growth error

  clauSilvaA asked Sep 7, 2023 in Q&A · Closed · Answered

  

  

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  Growth rates and relative abundance

  dinesh-kumar-k-b asked May 16, 2023 in Q&A · Answered

  

  

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  Same individual growth rates

  lhtxa asked Sep 7, 2023 in Q&A · Answered

  

  

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  Random flux sampling with min_growth

  jmol0917 asked Aug 22, 2023 in Q&A · Unanswered

  

  

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  Knockout analysis without specific medium?

  PathogeNish asked Aug 24, 2023 in Q&A · Unanswered

  

  

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  Objective for individual community strains

  jmol0917 asked Feb 2, 2021 in Q&A · Answered

  

  

  

  

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