A versatile pairwise aligner for genomic and spliced nucleotide sequences
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Updated
Aug 15, 2024 - C
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Sequence-to-graph mapper and graph generator
🔬 BEDOPS: high-performance genomic feature operations
GenomeTools genome analysis system.
Finds SNP sites from a multi-FASTA alignment file
Tools for manipulating sequence graphs in the GFA and rGFA formats
A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
De novo genome assembly and multisample variant calling
TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
Flexible genotype query among 30,000+ samples whole-genome
A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment
A WGS de novo assembler based on the FMD-index for large genomes
Model and predict short DNA sequence features with neural networks
Standalone C library for assembling Illumina short reads in small regions
Performs memory-efficient reservoir sampling on very large input files delimited by newlines
Evaluating genome assemblies
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