Automated Pipeline for Variant/Haplotype Calling and Filtering
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Updated
Jul 19, 2024 - Shell
Automated Pipeline for Variant/Haplotype Calling and Filtering
slurm and pbs scripts for genome, metagenome, transcriptome analysis.
Data Wrangling and Processing for Genomics
Platform for Oncogenomic Reporting and Interpretation (PORI)
VIral GEnome ASsembly pipelines for WGS
Docker images for the running the HADDOCK system for predicting the structure of biomolecular complexes.
pipeline for optimizing the clustering threshold in ipyrad RADseq assemblies
Set of scripts to process HybSeq target enrichment HTS data (on computing grids).
1,674 S.cerevisiae genomics data
Scripts and data regarding Vampyrellida genomics.
This pipeline processes high-throughput sequencing data (PE/SE) through QC,trim/filter,alignment,counting etc via sequential stages, with individual samples run in parallel via submission to a Slurm queue.
An in silico tool to predict Shigella serotypes
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
Bash, shell scripting functions
Methods and tools used for assembling the C. mast RC genome
TNTurnerLab Code for Revio Neuro-2a paper
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