gwas-summary-statistics
Here are 34 public repositories matching this topic...
Regression with Summary Statistics.
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Jul 3, 2024 - MATLAB
Code and simulations using interaction-LD score regression
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Jul 2, 2024 - Python
This project is designed to read and analyze GWAS (Genome-Wide Association Study) summary statistics from a .gz file. It performs various statistical calculations and generates several plots to visualize the data.
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Jun 20, 2024 - Python
A package to perform dual and single genomic subtraction through Genomic SEM.
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Jun 20, 2024 - R
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
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Aug 10, 2024 - JavaScript
Software to infer latent pleiotropic components from GWAS summary data
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Apr 24, 2024 - Python
Mendelian Randomization approach using Cross Ancestral Model
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Apr 4, 2024 - R
Julia implementation of Ge et al's PRScs
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Mar 8, 2024 - Julia
Regression with Summary Statistics exploiting Network Topology.
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Jan 2, 2024 - R
R code used for the master thesis entitled "Germline variants associated with prognosis of patients with non muscle invasive bladder cancer".
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Sep 19, 2023
tool for probabilistic correction of Winner's Curse in two-stage GWAS
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Aug 22, 2023 - R
Older repo for MRLocus. See new website for software usage guide:
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Aug 17, 2023 - R
BWMR (Bayesian Weighted Mendelian Randomization)
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Jun 14, 2023 - R
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
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Mar 15, 2023 - JavaScript
Make interactive LocusZoom plots from a local GWAS file
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Mar 4, 2023 - Vue
A web service to upload and share GWAS results with LocusZoom.js
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Feb 2, 2023 - Python
A collection of Go scripts to create a database of potential somatic artifacts in the TOPMed germline calls.
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Jan 2, 2023 - Go
GWAS summary statistics files QC tool
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Sep 2, 2022 - Python
Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data
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Aug 5, 2022 - Jupyter Notebook
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