Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
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Updated
Aug 30, 2024 - Python
Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
Using structure information only for protein homology detection (IEEE BIBM 2024).
A snakemake workflow for iterative sequence profile searching using jackhmmer from the HMMer3 package.
Searching proteins against a database of embeddings
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