Import and process results from a metagenomics output e.g. metaphlan2
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Updated
Jul 21, 2016 - R
Import and process results from a metagenomics output e.g. metaphlan2
Analyzing shotgun data
Benchmarking various taxonomic classifiers for profiling soil metagenomic data, with scripts and tools tailored for fungal, bacterial, and archaeal genome identification.
A simple R package to convert MetaPhlAn 4 output profiles to a phyloseq object.
shotgun metagenomics pipeline to obtain relative abundances and pathway abundances using biobakery software
Jacobs Lab UCLA : Preprocess shotgun metagenomics data on the UCLA supercomputer
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