Discovering known and novel miRNAs from small RNA sequencing data
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Updated
Nov 23, 2023 - Perl
Discovering known and novel miRNAs from small RNA sequencing data
An R package to analyse miRNA-mRNA interactions from miRNA and mRNA expression data
This script implements a Selenium WebDriver to automate the access to miRDB - MicroRNA Target Prediction and Functional Study Database and search for microRNAs targets/seeds present in custom mRNA sequences.
microRNA validation using Spark framework
An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer
Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release
A Bio2BEL package for miRBase (http://www.mirbase.org)
Anlysis of small RNAs in Arabidopsis SWR1 mutant (published in Choi et al. 2016, Plant Physiology, http://www.plantphysiol.org/content/171/2/1128)
Supporting code for:"A conserved RNA regulates miRNA turnover and animal behavior through a near-perfect miRNA site"
An R package to impute miRNA activity using protein-coding gene expression
Build SQLite tables of microRNAs and Transcription Factors-gene Correlations
"Conserved microRNAs and Flipons Shape Gene Expression during Development by Altering Promoter Conformations" International Journal of Molecular Sciences 24, no. 5: 4884
A Bio2BEL package for converting the Human microRNA Disease Database (HMDD) to BEL
Build the database file for cRegulome package
Identify and translate miRNA names between different miRBase versions
miRNA Discovery Project : simple, easy-to-use, rule-based miRNA candidate discovery with multithread acceleration
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