NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
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Updated
Aug 9, 2024 - R
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
Fast Whole Brain Segmentation (Layers, codes and Pre-trained Models)
The ImageJ framework for quantification of neuronal anatomy
R package implementing the NBLAST neuron search algorithm, as an add-on for the NeuroAnatomy Toolbox (nat) R package.
R package providing API access to the CATMAID web image annotation tool
Bridge HHMI Janelia MouseLight Database and nat R Package
Support for working with light and electron microscopy fly brain data
Comparative Connectomics of Public and In Progress Drosophila Datasets
Support functions for analysis of Drosophila connectomes especially the FAFB-FlyWire whole brain
The Cx3D modeling framework in SciView and SNT
R client utilities for interacting with the neuPrint connectome analysis service
Support for 3D template brains used as targets for image registration
A R Shiny app for sharing and viewing lateral horn data
Support for Drosophila bridging/mirroring registrations in R
Neuroanatomy Toolbox Support for Saalfeld/Bogovic HDF5 Registration Format
Bridge neuroanatomy toolbox ('nat') and 'ANTs' registration tools
Interface Between NeuroAnatomy Toolbox and Amira Visualisation Software
Batteries included docker image for full natverse
Fast C++ functions for computational neuroanatomy
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