Code for 2023 "Measuring Robustness of the Gap Gene Network" paper
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Updated
May 15, 2023 - Jupyter Notebook
Code for 2023 "Measuring Robustness of the Gap Gene Network" paper
SpecVar is a convenient tool for estimating interpretable genetic correlation of human complex traits and annotating the SNPs with context specific regulatory networks
Correlation Guided Network Integration
biopatternsg is a system that builds gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resources like Mesh, GeneOntology, UniProt, PDB and others, and that uses java and logical engines like prolog to integrate and analyse them.
Distributed simulations and analysis of synchronous Boolean networks
Finding paths of interest in networks
In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes
sRACIPE for bioconductor
Mechanistic Inference of Node-Edge Relationships (MINER)
Connecting nodes
Streaming over networks
Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations
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