Identification of differential RNA modifications from nanopore direct RNA sequencing
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Updated
Apr 29, 2024 - Python
Identification of differential RNA modifications from nanopore direct RNA sequencing
RNA modifications detection from Nanopore dRNA-Seq data
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
Convert mpileup format to base count tsv table
NanoML-5moU: A Machine Learning framework to detect 5mou modification in IVT direct RNA sequencing data
Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking
Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.
handful of tools that might be needed before or after HAMR
A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation
📦 Modstrings: implementation of Biostrings to work with nucleotide sequences containing modified nucleotides.
A bundle of HAMRtools for High-throughput RNA modification prediction and analysis
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