RNA-seq replication analysis.
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Updated
May 24, 2024 - R
RNA-seq replication analysis.
Snakemake workflow designed to perform RNASeq transcrpotime expression estimation with Salmon
Simple Snakemake RNA-Seq pipeline
An RNASeq snakemake workflow using the Tuxedo suite.
RNA-seq for rare diseases pipeline using nextflow
A basic pipeline for the analysis of RNASeq data. Entirely done in Bash and R script.
A book that discusses topics and contains tutorials relevant to population genomics
Introduction to Bioinformatics workflows with Nextflow
In this repository : i have created RNAseq pipeline using snakemake rules
A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
circs_snake : a snakemake-based circRNA detection workflow
A python package for working with inputs to and outputs from the toil-rnaseq pipeline
Snakemake workflow for Salmon quantification and FastQC quality controls
Pipeline for calling and analyzing variants from RNA-Seq data
Snakemake+singularity RNAseq processing pipeline
pilot pipeline that includes tool containerization
These snakefiles are prepared for the snakemake pipeline for the RNASeq analysis
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