PIASO: Precise Integration Analysis for Single-cell Omics
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Updated
Jul 21, 2024 - Python
PIASO: Precise Integration Analysis for Single-cell Omics
scripts for scRNA-Seq/scATAC-Seq
scRNA-seq and scATAC-seq utilities
Individual cell-based differential transcriptomic analysis across conditions
A R Shiny App for single-cell analysis
Containerized workflow for single cell detection of loss of Y chromosome and other mosaic chromosomal alterations in chronic kidney disease
One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.
Workflow to identify functional cis-regulatory regions for each annotated cell type
SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-cell resolution based on scATAC-seq.
Single Cell Allele-Specific Analysis - Containerized tool for genotyping, phasing, mapping bias correction, and generation of single cell allele-specific counts
Analyzing single cell ATAC data from the brains of drugged rats
Benchmarking computational single cell ATAC-seq methods
Comparison of the performance of AMULET and modified Scrublet on doublet removal in the CEMBA2.0 project.
Binary Factor Analysis: a dimensionality reduction tool for noisy, high throughput single cell genomic data
Single cell ANANSE Gene-regulatory-network analysis from Seurat objects
Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq
Sanger Cellular Genetics single-cell ATAC-seq pipeline.
Accurate and fast cell marker gene identification with COSG
Scripts for sincle cell multiome analysis
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