<<------ Use SnapATAC!!
-
Updated
Mar 15, 2019 - Python
<<------ Use SnapATAC!!
Benchmarking computational single cell ATAC-seq methods
Binary Factor Analysis: a dimensionality reduction tool for noisy, high throughput single cell genomic data
Analyzing single cell ATAC data from the brains of drugged rats
scripts for scRNA-Seq/scATAC-Seq
Scripts for sincle cell multiome analysis
All-in-one analysis pipeline
Comparison of the performance of AMULET and modified Scrublet on doublet removal in the CEMBA2.0 project.
Workflow for analysis of healthy human kidney by snRNAseq and snATACseq
Analysis Pipeline for Single Cell ATAC-seq
Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq
Accurate and fast cell marker gene identification with COSG
Papers with code for single cell related papers
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
Sanger Cellular Genetics single-cell ATAC-seq pipeline.
A R Shiny App for single-cell analysis
Single cell ANANSE Gene-regulatory-network analysis from Seurat objects
Containerized workflow for single cell detection of loss of Y chromosome and other mosaic chromosomal alterations in chronic kidney disease
Workflow to identify functional cis-regulatory regions for each annotated cell type
Add a description, image, and links to the single-cell-atac-seq topic page so that developers can more easily learn about it.
To associate your repository with the single-cell-atac-seq topic, visit your repo's landing page and select "manage topics."