small-rna
Here are 13 public repositories matching this topic...
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
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Jul 26, 2024 - Perl
A comprehensive collection of long inverted repeats in 424 eukaryotic genomes
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Nov 4, 2021 - R
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
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Jul 13, 2018 - Python
JBrowse plugin that supports smallRNA alignments
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Apr 8, 2019 - JavaScript
Pipeline to analyze small RNAs from single-cells
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Dec 8, 2017 - Gnuplot
A pipeline to analyse small RNA expression using Illumina sequencing data
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Jan 15, 2023 - R
R Markdown files for analyses of rice small RNA, gene expression and DNA methylation
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Jul 1, 2019
A little script that looks for piRNA clusters based on small RNA library coverage
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Mar 31, 2024 - C++
The scramAligner pipeline is designer to align small RNA reads to references sequences with no mis-matches. There is no requirement for reference index building. The pipeline is ideally suited to analysis of siRNAs generated from transgenes or viruses. Scripts for visualising alignments are also provided
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Jul 25, 2024 - Python
Snakemake workflow for processing small RNA-seq libaries
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Apr 12, 2021 - Python
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