reproducible research project template for R using Renv and snakemake with an econ application
-
Updated
Apr 19, 2022 - R
reproducible research project template for R using Renv and snakemake with an econ application
Repo to analyze population genetic data with many different methods
This repository has snakemake scripts for salmon-deseq2 pipeline for RNAseq data analysis
Simple template for running snakemake with R
hla-typing by optitype & polysolver , detect loh by lohhla.
a small exercise using Angrist & Krueger's 1991 data in a reproducible workflow
Snakemake workflow for transposable element RNA-Seq using TEtranscripts
Pipeline for consensus prediction of cell types in single-cell RNA sequencing data.
Repository to process ITS amplicon sequencing data and produce figures for Schneider et al (2021)
Integrated Mapping and Profiling of Allelically-expressed Loci with Annotations
Workflow for differential gene expression analysis for non-replicate samples using DEGseq
Differential gene expression analysis for samples with replicates using STAR-DeSeq2 pipeline
build xaringan slides with snakemake
Work at NIST: snakemake workflow to get short tandem repeats from WGS GIAB samples. R script for downstream processing and concordance
Add a description, image, and links to the snakemake-workflow topic page so that developers can more easily learn about it.
To associate your repository with the snakemake-workflow topic, visit your repo's landing page and select "manage topics."