Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
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Updated
Jul 6, 2021 - Python
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
Bi-allelic genotyping of reference transposable elements
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
Supporting repository for article "Software Evaluation for 'de novo' Detection of Transposons"
Analysis and selection of primers for the study of transposable elements.
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
A Python3 library for transposon fingerprinting
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
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