This repository contains the code used in the Master's Thesis "Transcriptomic keys of aging" from the Master's Degree in Biomedicine and Molecular Oncology from the University of Oviedo
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Updated
Jul 14, 2024 - R
This repository contains the code used in the Master's Thesis "Transcriptomic keys of aging" from the Master's Degree in Biomedicine and Molecular Oncology from the University of Oviedo
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
Bi-allelic genotyping of reference transposable elements
Bioinformatics project
Supporting repository for article "Software Evaluation for 'de novo' Detection of Transposons"
Pipeline to detect transposable elements (TEs) insertions polymorphism
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
Analysis and selection of primers for the study of transposable elements.
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
Detect elevations and gaps in read coverage on metagenome contigs or assembled genomes
Library-free horizontal transfer detection, with a focus on transposable element invasions
De novo repeat inference from long reads
Transposable Element Finder - Detection of active transposable elements from NGS data
Genotyping of segregating mobile elements insertions
Methods for genome paper
SLURM-ready bash scripts to run the complete REPET pipeline
Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis
A Python3 library for transposon fingerprinting
rMETL - realignment-based Mobile Element insertion detection Tool for Long read
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