IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
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Updated
Aug 23, 2024 - HTML
IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA
Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images
A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-seq sequencing data for 32 TCGA cancers (Poore et al. Nature 2020), including equivalent models using TCGA RNA-seq gene expression and combined microbial abundance and gene expression for comparison.
Analysis of treatment naive and neo-adjuvant chemotherapy treated high-grade serous ovarian cancer samples
Distinct mesenchymal cell states mediate prostate cancer progression
Tracking Multiphase blood flow into a tumor
Code and experiments for "Non-convex SVM for cancer diagnosis based on morphologic features of tumor microenvironment"
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