This table contains the Dockers I have built and their utilities. My DockerHub is located here.
| Docker Name | Docker Link | Dockerfile | Docker Folder (for other files) | Program Location |
|---|---|---|---|---|
| tychelewustl/whatshap:v.2.3 | Link | Dockerfile | Folder | /root/.local/bin/whatshap |
| tychelewustl/hifiasm:version3 | Link | Dockerfile | Folder | /opt/conda/bin/hifiasm |
| tychelewustl/test2:rdna | Link | Dockerfile | Folder | several requisites for running RNA scripts, digital karyotype scripts |
| tychelewustl/bwa:version1 | Link | Dockerfile | Folder | several requisites for running manta and bwa |
| tychelewustl/qmer_fcn:version1 | Link | Dockerfile | Folder | several requisites for running QuicK-mer2 and fastCN |
| tychelewustl/minimap2:version1 | Link | Dockerfile | Folder | /opt/conda/bin/minimap2 |
| tychelewustl/isoseq3:version1 | Link | Dockerfile | Folder | several programs for isoseq3 analyses |
| tychelewustl/exomiser_b38:version1 | Link | Dockerfile | Folder | /opt/conda/bin/java -jar exomiser-cli-12.1.0.jar |
| tychelewustl/test2:egp | Link | Dockerfile | Folder | several requisites for EGP |
| tychelewustl/test2:sig2 | Link | Dockerfile | Folder | SigProfilerSimulator related scripts |
| tychelewustl/unfazed:v1.0.2 | Link | Dockerfile | Folder | unfazed related scripts |
| tychelewustl/asciigenome:version1 | Link | Dockerfile | Folder | /opt/conda/bin/ASCIIGenome |
| tychelewustl/julia:dfvcfap | Link | Dockerfile | Folder | julia docker with VCFTools, DataFrames, and ArgParse packages installed |
| tychelewustl/julia:dfvcfap | Link | Dockerfile | Folder | (dfvcfapgz) julia docker with VCFTools, DataFrames, ArgParse, and GZip packages installed |
| tychelewustl/julia:dfvcfap3 | Link | Dockerfile | Folder | (dfvcfapgz3) julia docker with VCFTools, DataFrames, ArgParse, and GZip packages installed |
| tychelewustl/juliapython:version4 | Link | Dockerfile | Folder | (version4) julia docker with VCFTools, DataFrames, ArgParse, and GZip packages installed as well as Python, Snakemake, and capabilities to run Snakemake on LSF |
| tychelewustl/disopred:trial1 | Link | Dockerfile | Folder | (trial1) Docker with disopred |
| tychelewustl/fldpnn:trial1 | Link | Dockerfile | Folder | Docker with fldpnn |
| tychelewustl/gfatools_caln50:version1 | Link | Dockerfile | Folder | /gfatools/gfatools /opt/conda/bin/k8 calN50/calN50.js |
| Docker Name |
|---|
| google/deepvariant:1.0.0 |
| quay.io/mlin/glnexus:v1.2.7 |