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@umccr

UMCCR

University of Melbourne Centre for Cancer Research

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  1. htsget-rs htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    Rust 37 9

  2. infrastructure infrastructure Public

    Infrastructure as Code at UMCCR

    Python 10 8

  3. cwl-ica cwl-ica Public

    A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide

    Common Workflow Language 8 2

  4. data-portal-apis data-portal-apis Public

    UMCCR Data Portal API Backend in cloud native serverless

    Python 1

  5. orcabus orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    Python 3

  6. RNAsum RNAsum Public

    Pipeline for generating RNAseq-based cancer patient reports

    R 7 4

Repositories

Showing 10 of 121 repositories
  • orcabus Public

     🐋 UMCCR Pipeline & Workflow Orchestration

    umccr/orcabus’s past year of commit activity
    Python 3 0 31 4 Updated Aug 6, 2024
  • rportal Public

    🔮 R functionality for UMCCR Data Portal

    umccr/rportal’s past year of commit activity
    R 0 0 2 0 Updated Aug 6, 2024
  • cwl-novice-tutorial Public

    CWL Novice Tutorial

    umccr/cwl-novice-tutorial’s past year of commit activity
    HTML 0 0 0 0 Updated Aug 6, 2024
  • wrapica Public

    A suite of secondary / tertiary functions for running ICA API calls

    umccr/wrapica’s past year of commit activity
    Python 2 GPL-3.0 0 8 1 Updated Aug 5, 2024
  • infrastructure Public

    Infrastructure as Code at UMCCR

    umccr/infrastructure’s past year of commit activity
    Python 10 8 12 7 Updated Aug 5, 2024
  • icav2-cli-plugins Public

    A set of additional subcommands for icav2

    umccr/icav2-cli-plugins’s past year of commit activity
    Python 2 MIT 0 19 0 Updated Aug 5, 2024
  • dracarys Public

    🐲 UMCCR workflow tidying 🔥

    umccr/dracarys’s past year of commit activity
    R 0 0 23 0 Updated Aug 5, 2024
  • htsget-rs Public

    A server implementation of the htsget protocol for bioinformatics in Rust

    umccr/htsget-rs’s past year of commit activity
    Rust 37 MIT 9 17 4 Updated Aug 5, 2024
  • data-portal-apis Public

    UMCCR Data Portal API Backend in cloud native serverless

    umccr/data-portal-apis’s past year of commit activity
    Python 1 0 18 0 Updated Aug 5, 2024
  • crypt4gh-rust Public Forked from EGA-archive/crypt4gh-rust

    Rust implementation for the Crypt4GH encryption format

    umccr/crypt4gh-rust’s past year of commit activity
    Rust 0 Apache-2.0 2 0 1 Updated Aug 5, 2024