This repository holds the Julia implementation of the Core Cancer Metabolic Network published by Palsson and coworkers:
You can download this repository as a zip file, or clone/pull it by using the command (from the command-line):
$ git pull https://github.com/varnerlab/Core-Cancer-Model
or
$ git clone https://github.com/varnerlab/Core-Cancer-Model
This code is written in Julia, and requires a few Julia packages to run:
| Packages | Description |
|---|---|
| GLPK | GNU Linear programming kit package for Julia |
| MAT | Julia package to read/write MATLAB binary files |
| JSON | Julia JSON parser |
These packages can be installed using the Pkg.add() command in the Julia REPL. For example, to
install the GLPK package, you would execute the command in the REPL:
julia> Pkg.add("GLPK")
To use this code for your project, or to take advantage of changes that we have made to the Palsson study, check out the documentation.
The work described was supported by the Center on the Physics of Cancer Metabolism at Cornell University through Award Number 1U54CA210184-01 from the National Cancer Institute. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Cancer Institute or the National Institutes of Health.