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Xoco #5
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Collaborator
scunnac
commented
Sep 24, 2022
- updated documentation
- implemented an automatic download of latest singularity containers (guppy 6.7.3) with https URL of files on Drive IRD
- read id list for splitting fast5 files into genome bins is now created with the R script that handles creating genome specific fastq files. Hopefully, this solve occasional problems with fast5_subset from the ont api that failled because of supposedly too long read names.
- python scripts interface clarified between slurm and cluster. Documentation indicate that only local and slurm modes will be kept for configure
Tested with sample data set on a laptop and on iTrop with both local and slurm mode |
Good to go |
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