Complements mitoSim - the simulator of cell mitochondria as a spacelss graph.
This repository contains Python 3 code for:
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Numerical solution and analysis of differential-algebraic system approximating the mitochondria graph src/odes.py
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Analysis of some simulation results reported in the logfile src/time_dependent.py.
While the actual logfile is to be generated by running the mitoSim simulation, example files in /data directory may serve as a reference.
The scripts are accompanied by the corresponding ipython notebooks.
The recommended way of working with the mitoSim-postProcessor is by using Python virtual environment:
$ python3 -m venv venv
$ source ./venv/bin/activate
(venv) $ pip install -r requirements.txt Then, the script can be launched the ordinary way:
(venv) $ python src/odes.py To install and use the notebook:
(venv) $ pip install jupyter
(venv) $ jupyter notebook odes.ipynb mitoSim-postProcessor is available under the terms of the MIT license.
