v0.3.0

What's Changed

• Update deprecated setup.py to more modern pyproject.toml by @canthonyscott in #23
• Modernize ClubCpG dependencies and dev environment by @canthonyscott in #24

---

• A major overhaul and modernization of the ClubCpG dependencies.
• setup.py removed in favor of a pyproject.toml
• All project dependencies updated to modern versions
• Support of python 3.5, 3.6, 3.7, and 3.8 dropped
• Minimum version of python is now 3.9
• Added GitHub Actions workflows to automate testing of python 3.9 and 3.10
• Updated readthedocs build configuration ahead of deprecation of old method

Full Changelog: v0.2.5...v0.3.0

v0.2.5

This release fixes a bug where bin sizes were not correctly used in clustering if they were not 100. This fixes #17

What's Changed

• Dep ver updates by @canthonyscott in #13
• fixed bug where bin size was not correctly being passed to clustering by @canthonyscott in #18

Full Changelog: v0.2.4...v0.2.5

ClubCpG_v0.2.4

Fixes a bug that occurs with clustering in 6 CpG bins AFTER imputation has occurred. This release is also the first to be assigned a DOI.

ClubCpG_v0.2.3

This update includes bug fixes which allow more bins to be captured during analysis by handling reads with indels present instead of just dropping the bin.

Additionally the verbosity at run time has been reduced.

ClubCpG_v0.1.22

Sample data added to repo, permutations added as command line argument, file permissions fixed, line endings fixed, docs updated.

LPT: Don't commit linux executable files from windows!

v0.1.18

No source code changes from 0.1.16, just file permission updates and documentation updates.

0.1.16

First full public release including full documentation and a PyPi release