updated samtools as --o is required for transindel (introduced in sam…

…tools 1.16)
ylab-hi · Aug 2, 2024 · 868f9a3 · 868f9a3
1 parent bd37722
commit 868f9a3
Showing 1 changed file with 2 additions and 6 deletions.
diff --git a/workflow/envs/transindel.yml b/workflow/envs/transindel.yml
@@ -1,13 +1,9 @@
 channels:
-  - bioconda
   - conda-forge
+  - bioconda
   - defaults
-  - r
 dependencies:
-  - samtools=1.9
+  - samtools=1.20
   - pysam=0.15.3
   - htseq=2.0.3
   - pyfaidx=0.7.0
-  - pip=24.0
-  - pip:
-    - vcfpy==0.13.6