ikra v2.0.1

Bug fix

• update trim galore
• fix symbolic links

ikra v2.0

• added with alignment mode (users can select hisat2 or STAR as the aligner).
• update tool and reference versions.
• Gencode option allows users to specify Gencode version.
• Licence to CC BY-NC 4.0.

ikra v1.2.3

• switched sra-tools to without docker
• protein-coding to the default
• fixed a bug when an experiment table was created by Excel

ikra v1.2.2

• log
• fasterq-dump fix
• remove-intermediates

ikra v1.2.1

• English readme (thanks to @ykohki @kaitoou @matchan123)
• embedded tximport.R in ikra.sh.
• fix versions of tools

19/09/15 bug fix for the fasterq-dump runtime error. #47

ikra v1.2.0

• updated GENCODE to v30 and vM21
• added protein coding option
• version mode

and several improvements.
We are appreciating Dr. Bonohu's posts and comments notified bugs.

• Running ikra

ikra v1.1.1

FIXED A MAJOR BUG in tximport_R.R
DO NOT USE OLDER VERSIONS!

• The software name was to ikra
• An icon image was newly designed.
• Ikra corresponded to user's local fastq files.
• output file to output.tsv
• --output option added