Kindly if you find this repo useful for your work, cite & star this repo
What is this script?
Bakta is a very nice tool for bacterial genome annotation. However, if you used it for many genomes, and you want to merge the basic summary stats into one CSV sheet, then this simple Python3 script shall do this job.
What do you need?
You shall have the summary.txt files in one folder and these dependencies (pandas, openpyxl ,and argparse)
Just type this command and you will get the CSV sheet in the same folder of your txt files.
"-i /--input_dir" is your path to the directory of txt files
python bakta_stats.py -i ./txt Thanks