Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

add hdf5 support #9

Open
jonathanronen opened this issue Jul 29, 2018 · 0 comments
Open

add hdf5 support #9

jonathanronen opened this issue Jul 29, 2018 · 0 comments
Labels
enhancement question

Comments

@jonathanronen
Copy link
Contributor

to make netSmooth work with large, disk-based matrices (the DelayedArray, HDF5Array class, probably).

  • make sure netSmooth uses the same amount of memory regardless of the size of the data matrix
  • investigate if the gene network stored as HDF5 makes sense too
jonathanronen added a commit that referenced this issue Oct 31, 2018
@jonathanronen
Merge pull request #12 from nagoli104/hdf5_support
72a2d75 
HDF5 support (#9), UMAP for for dimensionality reduction (#10)
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
enhancement question
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@jonathanronen